General query

query_epigraphdb()

Send data request to an EpiGraphDB API endpoint

Topic queries

confounder()

MR evidence on confounding traits between exposure and outcome

drugs_risk_factors()

Drugs for risk factors

genetic_cor()

Genetic correlations between traits

literature_gwas()

Literature evidence regarding a GWAS trait

mr()

Return information related to Mendelian Randomisation

obs_cor()

Observational correlations between traits

ontology_gwas_efo()

Ontology association between EFO term and Gwas

pathway()

Pathway evidence

pqtl()

Return information related to the pQTL analysis

pqtl_list()

Return a list of all proteins/exposures or traits/outcomes available in the database

pqtl_pleio()

Return information related to the pleiotropy of SNPs

xqtl_multi_snp_mr()

Multi SNP QTL MR evidence

xqtl_single_snp_mr()

Single SNP QTL MR evidence

protein_in_pathway()

For the list of proteins, returns their associated pathway data

Utilities

mappings_gene_to_protein()

Return protein uniprot_id from associated genes

meta_nodes_list()

List meta nodes (e.g. Gwas, Gene, etc.)

meta_rels_list()

List meta rels (e.g. MR, etc.)

meta_nodes_list_node()

List nodes under a meta node

meta_rels_list_rel()

List relationships under a meta relationship

meta_nodes_search_node()

Search a node by its id field, or its name field

cypher()

Send a query in Cypher to EpiGraphDB