Ontology association between EFO term and Gwas

GET /ontology/gwas-efo

ontology_gwas_efo(
  trait = NULL,
  efo_term = NULL,
  fuzzy = TRUE,
  mode = c("table", "raw")
)

Arguments

trait	trait name, e.g. "body mass"
efo_term	EFO term, e.g. "systolic blood pressure"
fuzzy	whether query with exact matching (FALSE) or fuzzy matching (default, TRUE)
mode	If mode = "table", returns a data frame (a tibble as per tidyverse convention). If mode = "raw", returns a raw response from EpiGraphDB API with minimal parsing done by httr.

Value

Data from GET /ontology/gwas-efo

Examples

ontology_gwas_efo(trait = "blood", fuzzy = FALSE)
#> # A tibble: 0 x 0

ontology_gwas_efo(efo_term = "blood pressure", fuzzy = FALSE)
#> # A tibble: 4 x 6
#>   gwas.trait                 gwas.id  r.score efo.type   efo.value  efo.id      
#>   <chr>                      <chr>      <dbl> <chr>      <chr>      <chr>       
#> 1 Medication for cholestero… ukb-b-1…   0.785 typed-lit… blood pre… http://www.…
#> 2 Medication for cholestero… ukb-a-4…   0.785 typed-lit… blood pre… http://www.…
#> 3 Medication for cholestero… ukb-a-4…   0.785 typed-lit… blood pre… http://www.…
#> 4 Medication for cholestero… ukb-b-1…   0.785 typed-lit… blood pre… http://www.…