mappings_gene_to_protein(
  gene_name_list = NULL,
  gene_id_list = NULL,
  by_gene_id = FALSE,
  mode = c("table", "raw")
)

Arguments

gene_name_list

List of HGNC symbols of the genes (default)

gene_id_list

List of Ensembl gene IDs (when by_gene_id == TRUE)

by_gene_id

Search for gene ids (Ensembl gene IDs) instead of gene names (HGNC symbols)

mode

If mode = "table", returns a data frame (a tibble as per tidyverse convention). If mode = "raw", returns a raw response from EpiGraphDB API with minimal parsing done by httr.

Value

Data from POST /mappings/gene-to-protein

Examples

# By HGNC symbols mappings_gene_to_protein(gene_name_list = c("GCH1", "MYOF"))
#> # A tibble: 2 x 3 #> gene.name gene.ensembl_id protein.uniprot_id #> <chr> <chr> <chr> #> 1 GCH1 ENSG00000131979 P30793 #> 2 MYOF ENSG00000138119 Q9NZM1
# By Enselbl Ids mappings_gene_to_protein(gene_id_list = c("ENSG00000162594", "ENSG00000113302"), by_gene_id = TRUE)
#> # A tibble: 2 x 3 #> gene.name gene.ensembl_id protein.uniprot_id #> <chr> <chr> <chr> #> 1 IL23R ENSG00000162594 Q5VWK5 #> 2 IL12B ENSG00000113302 P29460