Return protein uniprot_id from associated genes — mappings_gene_to

POST /mappings/gene-to-protein

mappings_gene_to_protein(
  gene_name_list = NULL,
  gene_id_list = NULL,
  by_gene_id = FALSE,
  mode = c("table", "raw")
)

Arguments

gene_name_list: List of HGNC symbols of the genes (default)
gene_id_list: List of Ensembl gene IDs (when by_gene_id == TRUE)
by_gene_id: Search for gene ids (Ensembl gene IDs) instead of gene names (HGNC symbols)
mode: If mode = "table", returns a data frame (a tibble as per tidyverse convention). If mode = "raw", returns a raw response from EpiGraphDB API with minimal parsing done by httr.

Value

Data from POST /mappings/gene-to-protein

Examples

# By HGNC symbols
# \dontrun{
mappings_gene_to_protein(gene_name_list = c("GCH1", "MYOF"))
#> # A tibble: 2 × 3
#>   gene.name gene.ensembl_id protein.uniprot_id
#>   <chr>     <chr>           <chr>             
#> 1 GCH1      ENSG00000131979 P30793            
#> 2 MYOF      ENSG00000138119 Q9NZM1            
# }

# By Enselbl Ids
# \dontrun{
mappings_gene_to_protein(gene_id_list = c("ENSG00000162594", "ENSG00000113302"), by_gene_id = TRUE)
#> # A tibble: 2 × 3
#>   gene.name gene.ensembl_id protein.uniprot_id
#>   <chr>     <chr>           <chr>             
#> 1 IL23R     ENSG00000162594 Q5VWK5            
#> 2 IL12B     ENSG00000113302 P29460            
# }