Literature evidence regarding a GWAS trait — literature

GET /literature/gwas

literature_gwas(trait, semmed_predicate = NULL, mode = c("table", "raw"))

Arguments

trait	A trait name
semmed_predicate	Either NULL which returns entries from all predicates, or a SemMed predicate e.g. "DIAGNOSES" or "ASSOCIATED_WITH"
mode	If `mode = "table"`, returns a data frame (a `tibble` as per `tidyverse` convention). If `mode = "raw"`, returns a raw response from EpiGraphDB API with minimal parsing done by `httr`.

Value

Data from GET /literature/gwas

Examples

literature_gwas(trait = "Body mass index")
#> # A tibble: 50 x 9
#>    gwas.trait gwas.id gs.localCount gs.pval triple.subject_… triple.predicate
#>    <chr>      <chr>           <int>   <dbl> <chr>            <chr>           
#>  1 Body mass… ebi-a-…             2 8.04e-4 Insulin|INS      TREATS          
#>  2 Body mass… ebi-a-…             2 8.04e-4 Conjugated Equi… NEG_INTERACTS_W…
#>  3 Body mass… ebi-a-…             2 8.04e-4 Spondylarthritis PREDISPOSES     
#>  4 Body mass… ebi-a-…             7 3.47e-5 Hypertensive di… COEXISTS_WITH   
#>  5 Body mass… ebi-a-…             7 3.47e-5 Hypertensive di… COEXISTS_WITH   
#>  6 Body mass… ebi-a-…             7 3.47e-5 Hypertensive di… COEXISTS_WITH   
#>  7 Body mass… ebi-a-…             7 3.47e-5 Hypertensive di… COEXISTS_WITH   
#>  8 Body mass… ebi-a-…             7 3.47e-5 Hypertensive di… COEXISTS_WITH   
#>  9 Body mass… ebi-a-…             7 3.47e-5 Hypertensive di… COEXISTS_WITH   
#> 10 Body mass… ebi-a-…             2 8.04e-4 ANGPTL4          ASSOCIATED_WITH 
#> # … with 40 more rows, and 3 more variables: triple.id <chr>,
#> #   triple.object_name <chr>, lit.pubmed_id <chr>