Literature evidence regarding a GWAS trait — literature

GET /literature/gwas

literature_gwas(trait, semmed_predicate = NULL, mode = c("table", "raw"))

Arguments

trait: A trait name
semmed_predicate: Either NULL which returns entries from all predicates, or a SemMed predicate e.g. "DIAGNOSES" or "ASSOCIATED_WITH"
mode: If mode = "table", returns a data frame (a tibble as per tidyverse convention). If mode = "raw", returns a raw response from EpiGraphDB API with minimal parsing done by httr.

Value

Data from GET /literature/gwas

Examples

# \dontrun{
literature_gwas(trait = "Body mass index")
#> # A tibble: 50 × 8
#>    gwas.id    gwas.trait       gs.pval gs.localCount triple.id    triple.name   
#>    <chr>      <chr>              <dbl>         <int> <chr>        <chr>         
#>  1 ieu-a-1089 Body mass index 0.000759             2 C0002453:CO… Amenorrhea CO…
#>  2 ieu-a-1089 Body mass index 0.000759             2 C0012798:AU… Diuretics AUG…
#>  3 ieu-a-1089 Body mass index 0.000759             2 C0026832:DI… Muscle Protei…
#>  4 ieu-a-1089 Body mass index 0.000759             2 C0026832:DI… Muscle Protei…
#>  5 ieu-a-1089 Body mass index 0.000759             2 C0025598:IN… Metformin INH…
#>  6 ieu-a-1089 Body mass index 0.000759             2 C0032120:NE… Plasma Protei…
#>  7 ieu-a-1089 Body mass index 0.000759             2 C0005330:DI… Bezafibrate D…
#>  8 ieu-a-1089 Body mass index 0.000759             2 C0250604:AU… Eotaxin AUGME…
#>  9 ieu-a-1089 Body mass index 0.000759             2 10076:INHIB… PTPRU INHIBIT…
#> 10 ieu-a-1089 Body mass index 0.000759             2 C0608070:PR… dicarboxydine…
#> # … with 40 more rows, and 2 more variables: triple.predicate <chr>,
#> #   lit.id <chr>
# }