Sample Summary Statistics

Summarise the sample data

Usage

sample_summary(
  metaboprep,
  source_layer = "input",
  outlier_udist = 5,
  sample_ids = NULL,
  feature_ids = NULL,
  output = "data.frame"
)

Arguments

metaboprep

an object of class Metaboprep

source_layer

character, the data layer to summarise

outlier_udist

the unit distance in SD or IQR from the mean or median estimate, respectively outliers are identified at. Default value is 5.

sample_ids

character, vector of sample ids to work with

feature_ids

character, vector of feature ids to work with

output

character, type of output, either 'object' to return the updated metaboprep object, or 'data.frame' to return the data.