Search the Genotype-Phenotype Map — search

Search the GP Map for Traits, Genes or Variants

Usage

search_gpmap(search_text, rsquared_threshold = 0.8)

search_text: A character string specifying the search text
rsquared_threshold: A numeric value specifying the rsquared threshold for proxy variants, defaults to 0.8

A dataframe containing the search results with the following columns:

type: the type of the search result: "original_variant", "proxy_variant", "trait", "gene"
name: the name of the search result
type_id: the type_id of the search result. This is the internal id in which the data can be accessed.
call: the call to get the search result: "variant(type_id)", "trait(type_id)", "gene(type_id)"
info: a string containing informaiton about the search result, which may include:
- Extractions: the number of extractions
- Colocalisation Groups: the number of colocalisation groups
- Colocalisation Studies: the number of colocalisation studies
- Rare Results: the number of rare results
- Rsquared: the rsquared of the proxy variant compared to the original variant

After calling search, you can use call the subsequent data as described in the call column of the search results.