Perform fast phewas of a specific variants against all available GWAS datasets — phewas • ieugwasr

This is faster than doing it manually through associations

Usage

phewas(
  variants,
  pval = 1e-05,
  batch = c(),
  opengwas_jwt = get_opengwas_jwt(),
  ...
)

Arguments

variants: Array of variants e.g. c("rs234", "7:105561135-105563135")
pval: p-value threshold. Default = 0.00001
batch: Vector of batch IDs to search across. If c() (default) then returns all batches
opengwas_jwt: Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.
...: Unused, for extensibility

Value

Dataframe