Every rsid is searched for against each requested GWAS id. To get a list of available GWAS ids, or to find their meta data, use
gwasinfo. Can request LD proxies for instances when the requested rsid is not present in a particular GWAS dataset. This currently only uses an LD reference panel composed of Europeans in 1000 genomes version 3. It is also restricted to biallelic single nucleotide polymorphisms (no indels), with European MAF > 0.01.
associations( variants, id, proxies = 1, r2 = 0.8, align_alleles = 1, palindromes = 1, maf_threshold = 0.3, access_token = check_access_token() )
Array of variants e.g. c("rs234", "7:105561135-105563135")
Array of GWAS studies to query. See
0 or (default) 1 - indicating whether to look for proxies
Minimum proxy LD rsq value. Default=0.8
Try to align tag alleles to target alleles (if proxies = 1). 1 = yes (default), 0 = no
Allow palindromic SNPs (if proxies = 1). 1 = yes (default), 0 = no
MAF threshold to try to infer palindromic SNPs. Default = 0.3.
Google OAuth2 access token. Used to authenticate level of access to data. By default, checks if already authenticated through