Query vcf file, extracting by rsid

Query vcf file, extracting by rsid

query_rsid_file(rsid, vcffile, id = NULL, build = "GRCh37")

Arguments

rsid

Vector of rsids. Use DBSNP build (???)

vcffile

Path to .vcf.gz GWAS summary data file

id

If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter

build

Default="GRCh37" Build of vcffile

Value

VCF object