Query based on p-value threshold from vcf

Source: R/query.r

Query based on p-value threshold from vcf

query_pval_vcf(pval, vcf, id = NULL)

Arguments

pval

P-value threshold (NOT -log10)

vcf

VCF object (e.g. from readVcf)

id

If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter

Value

VCF object