Query pval from file using pvali index

See create_pvali_index

See create_pvali_index

query_pval_sqlite3(pval, vcffile, id = NULL, pvali)

query_pval_sqlite3(pval, vcffile, id = NULL, pvali)

Arguments

pval

pval threshold

vcffile

Path to .vcf.gz GWAS summary data file

id

If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter

pvali

Path to pval index file

Value

vcf object

vcf object