Query pval from vcf file

Query pval from vcf file

query_pval_file(pval, vcffile, id = NULL, build = "GRCh37")

Arguments

pval

P-value threshold (NOT -log10)

vcffile

Path to tabix indexed vcf file

id

If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter

build

Default="GRCh37"

Value

VCF object