Query chromosome and position using bcftools
Usage
query_chrompos_bcftools(chrompos, vcffile, id = NULL)
Arguments
- chrompos
Either vector of chromosome and position ranges e.g. "1:1000" or "1:1000-2000", or data frame with columns chrom, start, end.
- vcffile
Path to .vcf.gz GWAS summary data file
- id
If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter