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Find LD proxies for a set of SNPs

Source: R/proxy.r
get_ld_proxies.Rd

Find LD proxies for a set of SNPs

Usage

get_ld_proxies(
  rsid,
  bfile,
  searchspace = NULL,
  tag_kb = 5000,
  tag_nsnp = 5000,
  tag_r2 = 0.6,
  threads = 1,
  out = tempfile()
)

Arguments

rsid

list of rs IDs

bfile

ld reference panel

searchspace

Optional list of rs IDs to use as potential proxies

tag_kb

=5000 Proxy parameter

tag_nsnp

=5000 Proxy parameter

tag_r2

=0.6 Proxy parameter

threads

Number of threads to use (=1)

out

temporary output file

Value

data frame