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Chain files downloader

Source: R/liftover.R
download_chainfile.Rd

Human genome chain files are download from UCSC

Usage

download_chainfile(from = "GRCh37", to = "GRCh38")

Arguments

from

genome assembly to which GWAS summary data is currently mapped. Default "GRCh37".

  • Other options: "NCBI34", "NCBI35", "NCBI36" and "GRCh38"

to

genome assembly to which should be mapped. Default "GRCh38"

  • Other options: "NCBI34", "NCBI35", "NCBI36" and "GRCh37"

Value

A chain file