An S4 class to represent the Data Set

An S4 class to represent the Data Set

DataSet function

Usage

DataSet(...)

Arguments

...

Array of gwasglue2 SummarySet object names.

Value

A gwasglue2 DataSet object

Slots

summary_sets

A list of SummarySet objects (default NA).

overlap_variants

among all SummarySets

is_resized

logical (default FALSE).

is_harmonised

logical (default FALSE).

overall_dropped_SNPs

A vector of RSIDs that were removed from the summary_sets.

dropped_SNPs

A list of pairwise harmonising ouptput (SNPs removed from the summary_sets )

palindromic_SNPs

A list of pairwise harmonising ouptput.

ambiguous_SNPs

A list of pairwise harmonising ouptput.

incompatible_alleles_SNPs

A list of pairwise harmonising ouptput.

ld_matrix

LD matrix from reference population

is_harmonisedLD

logical (default FALSE).

zscores

vector of calculated z-scores

susie_marginalised

logical (default FALSE).

susieR

susieR::susie_rss() output

is_converted

logical (default FALSE).

describe

A description of the DataSet