Perform fine mapping pipeline using susieR

Source: R/susieR.r

Clumps data, then maps those to LD representative regions. Within each detected LD representative region, fine mapping is performed

susieR_pipeline(
  vcffile,
  bfile,
  plink_bin,
  pop,
  threads = 1,
  clump_kb = 1000,
  clump_r2 = 0.001,
  clump_p = 5e-08,
  ...
)

Arguments

vcffile

Path to vcf file
bfile

Path to ld reference panel
plink_bin

Path to plink
pop

EUR, ASN or AFR
clump_kb

<what param does>
clump_r2

<what param does>
clump_p

<what param does>
...

Optional arguments to be passed to susie_rss

Value

List