Function reference
-
Dataset
- Object that downloads, develops and uploads GWAS summary datasets for IEU OpenGWAS database
-
EbiDataset
- Object that downloads, develops and uploads EBI dataset
-
being_processed()
- being_processed
-
create_build_reference()
- Create dataset of some hm3 SNPs and their build positions
-
create_marts()
- Create marts for b36-38
-
determine_build()
- Determine build based on reference dataset
-
determine_build_biomart()
- Determines which build a set of SNPs are on
-
determine_build_position()
- Determine build just from positions
-
determine_new_datasets()
- determine_new_datasets
-
ebi_datasets()
- ebi_datasets
-
get_ftp_path()
- Get harmonised file for specific EBI ID
-
get_positions()
- Lookup positions for given rsids in particular build
-
liftover_gwas()
- Liftover GWAS positions
-
listftp()
- listftp