medrxivr
The goal of the medrxivr R package is two-fold. In the first instance, it provides programmatic access to the Cold Spring Harbour Laboratory (CSHL) API, allowing users to easily download medRxiv and bioRxiv preprint metadata (e.g. title, abstract, publication date, author list, etc) into R. The package also provides access to a maintained static snapshot of the medRxiv repository (see Data sources). Secondly, medrxivr provides functions to search the downloaded preprint records using regular expressions and Boolean logic, as well as helper functions that allow users to export their search results to a .BIB file for easy import to a reference manager and to download the full-text PDFs of preprints matching their search criteria.
Maintainer(s): Luke McGuinness
contact: luke.mcguinness[at]bristol.ac.uk
Collaborator(s): Lena Schmidt
Software URL: https://docs.ropensci.org/medrxivr/
Source code: https://github.com/ropensci/medrxivr
Open source license: MIT
Tags:
- Active maintenance
- MIT
- Methodology
- R
- Software package
Point of development: Active maintenance
Publication: McGuinness, L. A., & Schmidt, L. (2020). medrxivr: Accessing and searching medRxiv and bioRxiv preprint data in R. Journal of Open Source Software, 5(54), 2651. https://doi.org/10.21105/joss.02651