Obtain variants around a gene — variants_gene • ieugwasr

Provide a gene identified, either Ensembl or Entrez

Usage

variants_gene(gene, radius = 0, opengwas_jwt = get_opengwas_jwt())

Arguments

gene: Vector of genes, either Ensembl or Entrez, e.g. c("ENSG00000123374", "ENSG00000160791") or 1017
radius: Radius around the gene region to include. Default = 0
opengwas_jwt: Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.

Value

data frame with the following columns