Look up allele frequencies and LD scores for 1000 genomes populations by rsid

Look up allele frequencies and LD scores for 1000 genomes populations by rsid

Usage

afl2_rsid(rsid, reference = "1000g", opengwas_jwt = get_opengwas_jwt())

Arguments

rsid

Vector of rsids

reference

Default="1000g"

opengwas_jwt

Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.

Value

Data frame containing ancestry specific LD scores and allele frequencies for each variant